CSI NGS Portal: An Online Platform for Automated NGS Data Analysis and Sharing

Beyond NGS data sharing and towards open science

Biosciences have been revolutionized by next generation sequencing (NGS) technologies in last years, leading to new perspectives in medical, industrial and environmental applications. And although our motivation comes from biosciences, the following is true for many areas of science: published results are usually hard to reproduce either because data is not available or tools are not readily av...

oneChannelGUI Package: NGS secondary data analysis

OneChannelGUI was initially developed to provide a new set of functions extending the capability of affylmGUI package. oneChannelGUI was designed specifically for life scientists who are not familiar with R language but do wish to capitalize on the vast analysis opportunities of Bioconductor. oneChannelGUI offers a comprehensive microarray analysis for single channel pplatforms. Since Second Ge...

Bioinformatics developments for NGS data analysis at PRABI

The recent developments performed at PRABI for NGS data analysis are led in three main directions: i) short reads clustering for metagenomic data; ii) Open Reading Frames (ORFs) detection in metagenomes; and iii) statistical detection of peaks applied to the identification of replication origins on the human genome and to chIP-Seq data. One of the problems frequently encountered with present da...

NARWHAL, a primary analysis pipeline for NGS data

UNLABELLED The NARWHAL software pipeline has been developed to automate the primary analysis of Illumina sequencing data. This pipeline combines a new and flexible de-multiplexing tool with open-source aligners and automated quality assessment. The entire pipeline can be run using only one simple sample-sheet for diverse sequencing applications. NARWHAL creates a sample-oriented data structure ...

ngsCAT Capture Assessment Tool for NGS data